Transcriptome Analysis Identifies Differentially Regulated Genes Contributing To Hematological Response After Radiation Exposure In A Mouse Model
Abdulnaser Alkhalil1, John Clifford2, Stacy Miller3, Ross Campbell4, Aarti Gautam5, Marti Jett5, Rasha Hammamieh5, Lauren Moffatt1, Jeffrey Shupp1
1MedStar Health Research Institute, Washington, DC, USA, 2USAISR, San Antonio, TX, USA, 3The Oak Ridge Institute for Science and Education, Fort Detrick, MD, USA, 4The Geneva Foundation, Washington, DC, USA, 5Walter Reed Army Institute of Research, Silver Spring, MD, USA
Background: Risks of radiation exposure in occupational, accidental, or deliberate incidents are on increase. Physiological and biological consequences of ionizing radiation exposures are not well understood but known to be accumulative and lethal at higher doses when repair and restoration mechanisms in affected victims are overwhelmed. Using a genomic approach in a mouse irradiation model we have characterized hematological responses that align with clinical manifestation of radiation exposure at molecular levels. Opposite hematological responses in survivable and lethal IR doses were identified.
Methods: Groups of mice n=5 received whole-body x-ray exposures (0, 1, 3, 6, or 20Gy) and skin biopsies were obtained from each animal at times post-irradiation (h2, Days 4, 7, 21, 28). Biopsies were collected from the 20Gy cohort for only days 0, 4, and 7. Total RNA was isolated and microarrays were performed and analyzed using custom R scripts to obtain lists of probe sets differentially expressed. Changes in gene expression at Benjamini-Hochberg FDR adjusted P less than 0.05 and FC greater than 2 were deemed significant. Analyses were performed comparing the different doses of X-ray exposure over all time points.
Results: Mice in the 20Gy group were euthanized by d7 and the dose was considered lethal. Animals in 1, 3, and 6Gy groups completed the full experiment to d28. Sammon plot analysis of transcriptomes showed clear separation of samples based on the irradiation levels and time after exposure. Pathways enrichment analysis of the significantly differentially transcribed genes (SDTGs) identified GP6 signaling pathway and the intrinsic prothrombin activation pathway among the top significantly (-log p greater than 1.3 and z-score greater than Abs 2) modulated pathways in lethal and sublethal IR doses. Both pathways were predicted significantly inactivated in lethal doses and activated in at least one time point in the sublethal doses. Dysregulation of collagens, laminin, calmodulin, platelet-derived growth factor like and kallikrein related peptidases underlying the modulations in these pathways. Other genes contributing to heme-binding and movement and activation of leukocytes and blood cells, such as erythroblast membrane associated protein (ERMAP), erythroid differentiation regulator 1 (EERDR1), hemoglobin subunit alpha 2 and beta (HBA1/HBA2, HBB), hemopexin (HPX), heme binding protein 2 (HEBP2), and hemojuvelin BMP co-receptor (HJV) were differentially transcribed after IR exposure.
Conclusions: These results introduce the major pathways and genes involved in hematological system responses to IR dose exposures and differentiate between responses to lethal and sublethal doses.